The San Francisco Bay was a body of water on Earth, located near Starfleet Headquarters, adjacent to the city of San Francisco. (TOS novel: The Fearful Summons)

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Bodies of water of planet Earth
Allegheny River • Arno • Arctic Ocean • Atlantic Ocean • Bering Sea • Chattahoochee River • East River • English Channel • Great Lakes • Gulf of Mexico • Indian Ocean • Mediterranean Sea • River Thames • Pacific Ocean • San Francisco Bay • Scheldt River • Seine River • Tiber River • Victoria Falls